Publications

Won THyung, Arifuzzaman M, Parkhurst CN, Miranda IC, Zhang B, Hu E, Kashyap S, Letourneau J, Jin W-B, Fu Y et al..  2025.  Host metabolism balances microbial regulation of bile acid signalling.. Nature. 638(8049):216-224.

Amisaki M, Zebboudj A, Yano H, Zhang SLinsey, Payne G, Chandra AKaya, Yu R, Guasp P, Sethna ZM, Ohmoto A et al..  2025.  IL-33-activated ILC2s induce tertiary lymphoid structures in pancreatic cancer.. Nature.

Mayassi T, Li C, Segerstolpe Å, Brown EM, Weisberg R, Nakata T, Yano H, Herbst P, Artis D, Graham DB et al..  2025.  Publisher Correction: Spatially restricted immune and microbiota-driven adaptation of the gut.. Nature. 637(8044):E10.

Ahmed A, Joseph AM, Zhou J, Horn V, Uddin J, Lyu M, Goc J, Sockolow RE, Wing JB, Vivier E et al..  2024.  CTLA-4-expressing ILC3s restrain interleukin-23-mediated inflammation.. Nature. 630(8018):976-983.

Arifuzzaman M, Won THyung, Yano H, Uddin J, Emanuel ER, Hu E, Zhang W, Li T-T, Jin W-B, Grier A et al..  2024.  Dietary fiber is a critical determinant of pathologic ILC2 responses and intestinal inflammation.. J Exp Med. 221(5)

Troch KF, Jakob MO, Forster PM, Jarick KJ, Schreiber J, Preusser A, Guerra GM, Durek P, Tizian C, Sterczyk N et al..  2024.  Group 2 innate lymphoid cells are a non-redundant source of interleukin-5 required for development and function of murine B1 cells.. Nat Commun. 15(1):10566.

Mayassi T, Li C, Segerstolpe Å, Brown EM, Weisberg R, Nakata T, Yano H, Herbst P, Artis D, Graham DB et al..  2024.  Spatially restricted immune and microbiota-driven adaptation of the gut.. Nature. 636(8042):447-456.

Wheeler MA, Clark IC, Lee H-G, Li Z, Linnerbauer M, Rone JM, Blain M, Akl CFaust, Piester G, Giovannoni F et al..  2023.  Droplet-based forward genetic screening of astrocyte-microglia cross-talk.. Science. 379(6636):1023-1030.

Jin W-B, Li T-T, Huo D, Qu S, Li XV, Arifuzzaman M, Lima SF, Shi H-Q, Wang A, Putzel GG et al..  2022.  Genetic manipulation of gut microbes enables single-gene interrogation in a complex microbiome.. Cell. 185(3):547-562.e22.

Lyu M, Suzuki H, Kang L, Gaspal F, Zhou W, Goc J, Zhou L, Zhou J, Zhang W, Shen Z et al..  2022.  ILC3s select microbiota-specific regulatory T cells to establish tolerance in the gut.. Nature. 610(7933):744-751.

Arifuzzaman M, Won THyung, Li T-T, Yano H, Digumarthi S, Heras AF, Zhang W, Parkhurst CN, Kashyap S, Jin W-B et al..  2022.  Inulin fibre promotes microbiota-derived bile acids and type 2 inflammation.. Nature. 611(7936):578-584.

Arifuzzaman M, Won THyung, Li T-T, Yano H, Digumarthi S, Heras AF, Zhang W, Parkhurst CN, Kashyap S, Jin W-B et al..  2022.  Inulin fibre promotes microbiota-derived bile acids and type 2 inflammation.. Nature. 611(7936):578-584.

Arifuzzaman M, Won THyung, Li T-T, Yano H, Digumarthi S, Heras AF, Zhang W, Parkhurst CN, Kashyap S, Jin W-B et al..  2022.  Inulin fibre promotes microbiota-derived bile acids and type 2 inflammation.. Nature. 611(7936):578-584.

Chung H, Parkhurst CN, Magee EM, Phillips D, Habibi E, Chen F, Yeung BZ, Waldman J, Artis D, Regev A.  2021.  Joint single-cell measurements of nuclear proteins and RNA in vivo.. Nat Methods. 18(10):1204-1212.

Campbell L, Hepworth MR, Whittingham-Dowd J, Thompson S, Bancroft AJ, Hayes KS, Shaw TN, Dickey BF, Flamar A-L, Artis D et al..  2019.  ILC2s mediate systemic innate protection by priming mucus production at distal mucosal sites.. J Exp Med. 216(12):2714-2723.

Monticelli LA, Diamond JM, Saenz SA, Wojno EDTait, Porteous MK, Cantu E, Artis D, Christie JD.  2019.  Lung Innate Lymphoid Cell Composition is Altered in Primary Graft Dysfunction.. Am J Respir Crit Care Med.

Chu C, Murdock MH, Jing D, Won THyung, Chung H, Kressel AM, Tsaava T, Addorisio ME, Putzel GG, Zhou L et al..  2019.  The microbiota regulate neuronal function and fear extinction learning.. Nature. 574(7779):543-548.

Yudanin NA, Schmitz F, Flamar A-L, Thome JJC, Wojno ETait, Moeller JB, Schirmer M, Latorre IJ, Xavier RJ, Farber DL et al..  2019.  Spatial and Temporal Mapping of Human Innate Lymphoid Cells Reveals Elements of Tissue Specificity.. Immunity. 50(2):505-519.e4.

Chu C, Moriyama S, Li Z, Zhou L, Flamar A-L, Klose CSN, Moeller JB, Putzel GG, Withers DR, Sonnenberg GF et al..  2018.  Anti-microbial Functions of Group 3 Innate Lymphoid Cells in Gut-Associated Lymphoid Tissues Are Regulated by G-Protein-Coupled Receptor 183.. Cell Rep. 23(13):3750-3758.

Hussain M, Borcard L, Walsh KP, Rodriguez MPena, Mueller C, Kim BS, Kubo M, Artis D, Noti M.  2017.  Basophil-derived IL-4 promotes epicutaneous antigen sensitization concomitant with the development of food allergy.. J Allergy Clin Immunol.

Nice TJ, Osborne LC, Tomov VT, Artis D, E Wherry J, Virgin HW.  2017.  Correction: Type I Interferon Receptor Deficiency in Dendritic Cells Facilitates Systemic Murine Norovirus Persistence Despite Enhanced Adaptive Immunity.. PLoS Pathog. 13(2):e1006223.

Wallrapp A, Riesenfeld SJ, Burkett PR, Abdulnour R-EE, Nyman J, Dionne D, Hofree M, Cuoco MS, Rodman C, Farouq D et al..  2017.  The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.. Nature. 549(7672):351-356.

Jacob V, Crawford C, Cohen-Mekelburg S, Viladomiu M, Putzel GG, Schneider Y, Chabouni F, OʼNeil S, Bosworth B, Woo V et al..  2017.  Single Delivery of High-Diversity Fecal Microbiota Preparation by Colonoscopy Is Safe and Effective in Increasing Microbial Diversity in Active Ulcerative Colitis.. Inflamm Bowel Dis. 23(6):903-911.

Leichner TM, Satake A, Harrison VSanoe, Tanaka Y, Archambault AS, Kim BS, Siracusa MC, Leonard WJ, Naji A, Wu GF et al..  2017.  Skin-derived TSLP systemically expands regulatory T cells.. J Autoimmun. 79:39-52.

Monticelli LA, Buck MD, Flamar A-L, Saenz SA, Wojno EDTait, Yudanin NA, Osborne LC, Hepworth MR, Tran SV, Rodewald H-R et al..  2016.  Arginase 1 is an innate lymphoid-cell-intrinsic metabolic checkpoint controlling type 2 inflammation.. Nat Immunol. 17(6):656-65.